<?xml version="1.0" encoding="UTF-8"?>
<entry>
	<accession>DI2000028</accession>
	<general>
		<name>14-3-3 zeta in complex with a diphosphorylated c-Raf peptide</name>
		<pdb_id>4ihl</pdb_id>
		<exp_method>X-ray</exp_method>
		<resolution>2.20</resolution>
		<source_organism>Homo sapiens</source_organism>
		<disorder_status>Inferred from motif</disorder_status>
		<kd>
			<value>2.00E-08</value>
			<pubmed_id>23808890</pubmed_id>
		</kd>
		<publication>
			<pmid>23808890</pmid>
			<authors>Molzan M, Kasper S, Röglin L, Skwarczynska M, Sassa T, Inoue T, Breitenbuecher F, Ohkanda J, Kato N, Schuler M, Ottmann C</authors>
			<title>Stabilization of Physical RAF/14-3-3 Interaction by Cotylenin A as Treatment Strategy for RAS Mutant Cancers.</title>
			<journal>ACS Chem. Biol.</journal>
			<year>2013</year>
			<abstract>One-third of all human cancers harbor somatic RAS mutations. This leads to aberrant activation of downstream signaling pathways involving the RAF kinases. Current ATP-competitive RAF inhibitors are active in cancers with somatic RAF mutations, such as BRAF(V600) mutant melanomas. However, they paradoxically promote the growth of RAS mutant tumors, partly due to the complex interplay between different homo- and heterodimers of A-RAF, B-RAF, and C-RAF. Based on pathway analysis and structure-guided compound identification, we describe the natural product cotylenin-A (CN-A) as stabilizer of the physical interaction of C-RAF with 14-3-3 proteins. CN-A binds to inhibitory 14-3-3 interaction sites of C-RAF, pSer233, and pSer259, but not to the activating interaction site, pSer621. While CN-A alone is inactive in RAS mutant cancer models, combined treatment with CN-A and an anti-EGFR antibody synergistically suppresses tumor growth in vitro and in vivo. This defines a novel pharmacologic strategy for treatment of RAS mutant cancers.</abstract>
		</publication>
	</general>
	<function>
		<molecular_function>
			<go>
				<accession>GO:0042802</accession>
				<name>identical protein binding</name>
			</go>
			<go>
				<accession>GO:0097159</accession>
				<name>organic cyclic compound binding</name>
			</go>
			<go>
				<accession>GO:0019901</accession>
				<name>protein kinase binding</name>
			</go>
		</molecular_function>
		<biological_process>
			<go>
				<accession>GO:0007165</accession>
				<name>signal transduction</name>
			</go>
			<go>
				<accession>GO:0030168</accession>
				<name>platelet activation</name>
			</go>
			<go>
				<accession>GO:0043066</accession>
				<name>negative regulation of apoptotic process</name>
			</go>
			<go>
				<accession>GO:0015833</accession>
				<name>peptide transport</name>
			</go>
			<go>
				<accession>GO:0010468</accession>
				<name>regulation of gene expression</name>
			</go>
			<go>
				<accession>GO:0051649</accession>
				<name>establishment of localization in cell</name>
			</go>
			<go>
				<accession>GO:0006996</accession>
				<name>organelle organization</name>
			</go>
			<go>
				<accession>GO:0022607</accession>
				<name>cellular component assembly</name>
			</go>
			<go>
				<accession>GO:0009967</accession>
				<name>positive regulation of signal transduction</name>
			</go>
			<go>
				<accession>GO:0051128</accession>
				<name>regulation of cellular component organization</name>
			</go>
			<go>
				<accession>GO:0032879</accession>
				<name>regulation of localization</name>
			</go>
		</biological_process>
		<cellular_component>
			<go>
				<accession>GO:0005739</accession>
				<name>mitochondrion</name>
			</go>
			<go>
				<accession>GO:0005829</accession>
				<name>cytosol</name>
			</go>
			<go>
				<accession>GO:0005654</accession>
				<name>nucleoplasm</name>
			</go>
		</cellular_component>
	</function>
	<macromolecules>
		<general>
			<note>No modifications of the original PDB file.</note>
			<nr_of_chains>3</nr_of_chains>
			<domain_type>14-3-3</domain_type>
		</general>
		<chain>
			<id>P</id>
			<name>RAF proto-oncogene serine/threonine-protein kinase</name>
			<type>Disordered</type>
			<source_organism>Homo sapiens</source_organism>
			<sequence>QHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVH</sequence>
			<modified_residues>
				<modres>
					<pdb_position>233</pdb_position>
					<uniprot_position>233</uniprot_position>
					<aminoacid>S</aminoacid>
					<definition>phosphoserine</definition>
				</modres>
				<modres>
					<pdb_position>259</pdb_position>
					<uniprot_position>259</uniprot_position>
					<aminoacid>S</aminoacid>
					<definition>phosphoserine</definition>
				</modres>
			</modified_residues>
			<length>36</length>
			<uniprot>
				<id>P04049</id>
				<start>229</start>
				<end>264</end>
				<coverage>5.6%</coverage>
			</uniprot>
			<uniref90>
				<id>UniRef90_P04049</id>
				<start>229</start>
				<end>264</end>
			</uniref90>
			<regions>
			</regions>
		</chain>
		<chain>
			<id>A</id>
			<name>14-3-3 protein zeta/delta</name>
			<type>Ordered component</type>
			<source_organism>Homo sapiens</source_organism>
			<sequence>MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS</sequence>
			<length>230</length>
			<uniprot>
				<id>P63104</id>
				<start>1</start>
				<end>230</end>
				<coverage>93.9%</coverage>
			</uniprot>
			<uniref90>
				<id>UniRef90_P63104</id>
				<start>1</start>
				<end>230</end>
			</uniref90>
			<regions>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>2</region_start>
					<region_end>15</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>19</region_start>
					<region_end>31</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>38</region_start>
					<region_end>67</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>73</region_start>
					<region_end>108</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>112</region_start>
					<region_end>130</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>137</region_start>
					<region_end>159</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>165</region_start>
					<region_end>181</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>185</region_start>
					<region_end>201</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>203</region_start>
					<region_end>205</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>211</region_start>
					<region_end>229</region_end>
				</region>
				<region>
					<region_type>pfam</region_type>
					<region_id>PF00244.17</region_id>
					<region_name>14-3-3</region_name>
					<region_start>9</region_start>
					<region_end>229</region_end>
				</region>
			</regions>
		</chain>
		<chain>
			<id>B</id>
			<name>14-3-3 protein zeta/delta</name>
			<type>Ordered component</type>
			<source_organism>Homo sapiens</source_organism>
			<sequence>MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS</sequence>
			<length>230</length>
			<uniprot>
				<id>P63104</id>
				<start>1</start>
				<end>230</end>
				<coverage>93.9%</coverage>
			</uniprot>
			<uniref90>
				<id>UniRef90_P63104</id>
				<start>1</start>
				<end>230</end>
			</uniref90>
			<regions>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>2</region_start>
					<region_end>15</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>19</region_start>
					<region_end>31</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>42</region_start>
					<region_end>57</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>60</region_start>
					<region_end>65</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>71</region_start>
					<region_end>104</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>108</region_start>
					<region_end>127</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>133</region_start>
					<region_end>154</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>160</region_start>
					<region_end>175</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>180</region_start>
					<region_end>195</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>198</region_start>
					<region_end>200</region_end>
				</region>
				<region>
					<region_type>secondary structure</region_type>
					<region_name>helix</region_name>
					<region_start>206</region_start>
					<region_end>224</region_end>
				</region>
				<region>
					<region_type>pfam</region_type>
					<region_id>PF00244.17</region_id>
					<region_name>14-3-3</region_name>
					<region_start>9</region_start>
					<region_end>229</region_end>
				</region>
			</regions>
		</chain>
	</macromolecules>
	<evidence>
		<chain_evidence>
			<chain_id>P</chain_id>
			<support>The protein region involved in the interaction contains two instances of a known functional linear motif (LIG_14-3-3_CanoR_1).</support>
		</chain_evidence>
		<chain_evidence>
			<chain_id>A</chain_id>
			<support>The 14-3-3 domain involved in the interaction is known to adopt a stable structure in isolation in dimeric form (see Pfam domain PF00244). A solved structure of the domain dimer without bound ligands is represented by PDB ID 1a4o.</support>
		</chain_evidence>
		<chain_evidence>
			<chain_id>B</chain_id>
			<support>The 14-3-3 domain involved in the interaction is known to adopt a stable structure in isolation in dimeric form (see Pfam domain PF00244). A solved structure of the domain dimer without bound ligands is represented by PDB ID 1a4o.</support>
		</chain_evidence>
	</evidence>
	<related_structures>
		<pdb_id>3cu8</pdb_id>
		<pdb_id>3nkx</pdb_id>
		<pdb_id>4fj3</pdb_id>
	</related_structures>
</entry>
